PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C021987P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ZF-HD
Protein Properties Length: 106aa    MW: 11773.5 Da    PI: 9.4856
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C021987P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.84.8e-324095359
     ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                    +vrY eC+kNhAa +Gg+avDGC+Efm+s g+egt+a+l+CaACgCHRnFHRr+v +
  MELO3C021987P1 40 SVRYGECQKNHAAGVGGYAVDGCREFMAS-GDEGTTAGLTCAACGCHRNFHRRQVGT 95
                    79**************************9.999********************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-271497IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.8E-294192IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.3E-264292IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.5734392IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MDLLLQFFFS LVQMRKRQVV LRRSEEPSRD TVASSFTVRS VRYGECQKNH AAGVGGYAVD  60
GCREFMASGD EGTTAGLTCA ACGCHRNFHR RQVGTEVHMR IKKVM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818891e-161LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132631e-161LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459312.13e-56PREDICTED: mini zinc finger protein 2
RefseqXP_008459313.13e-56PREDICTED: mini zinc finger protein 2
SwissprotQ9LJW58e-37MIF2_ARATH; Mini zinc finger protein 2
TrEMBLA0A0A0KVJ72e-54A0A0A0KVJ7_CUCSA; Transcription factor
STRINGVIT_14s0108g00810.t015e-44(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.15e-38mini zinc finger 2